Publications

2018

Cusanovich, D. A., A. J. Hill, D. Aghamirzaie, R. M. Daza, H. A. Pliner, J. B. Berletch, G. N. Filippova, X. Huang, L. Christiansen, W. S. DeWitt, et al., "A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility.", Cell, 2018 Jul 18. PMID: 30078704
Link, V. M., S. H. Duttke, H. B. Chun, I. R. Holtman, E. Westin, M. A. Hoeksema, Y. Abe, D. Skola, C. E. Romanoski, J. Tao, et al., "Analysis of Genetically Diverse Macrophages Reveals Local and Domain-wide Mechanisms that Control Transcription Factor Binding and Function.", Cell, vol. 173, issue 7, pp. 1796-1809.e17, 2018 06 14. PMCID: PMC6003872  PMID: 29779944
Thomas, A. N., R. A. Root, C. R Lantz, E. A Sáez, and J. Chorover, "Oxidative weathering decreases bioaccessibility of toxic metal(loid)s in PM emissions from sulfide mine tailings.", Geohealth, vol. 2, issue 4, pp. 118-138, 2018 Apr. PMCID: PMC6191178  PMID: 30338309
Pappas, C. T., G. P. Farman, R. M. Mayfield, J. P. Konhilas, and C. C. Gregorio, "Cardiac-specific knockout of Lmod2 results in a severe reduction in myofilament force production and rapid cardiac failure.", J Mol Cell Cardiol, vol. 122, pp. 88-97, 2018 09. PMCID: PMC6324932  PMID: 30102883
Bhagwandin, C., E. L. Ashbeck, M. Whalen, J. Bandola-Simon, P. A. Roche, A. Szajman, S. Mai Truong, B. C. Wertheim, Y. C. Klimentidis, S. Ishido, et al., "The E3 ubiquitin ligase MARCH1 regulates glucose-tolerance and lipid storage in a sex-specific manner.", PLoS One, vol. 13, issue 10, pp. e0204898, 2018. PMCID: PMC6200199  PMID: 30356278
Pliner, H. A., J. S. Packer, J. L. McFaline-Figueroa, D. A. Cusanovich, R. M. Daza, D. Aghamirzaie, S. Srivatsan, X. Qiu, D. Jackson, A. Minkina, et al., "Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data.", Mol Cell, 2018 Jul 23. PMID: 30078726

2017

Zavros, Y., "Initiation and Maintenance of Gastric Cancer: A Focus on CD44 Variant Isoforms and Cancer Stem Cells.", Cell Mol Gastroenterol Hepatol, vol. 4, issue 1, pp. 55-63, 2017 Jul. PMCID: PMC5439237  PMID: 28560289
Cunniff, C., J. A. Bassetti, and N. A. Ellis, "Bloom's Syndrome: Clinical Spectrum, Molecular Pathogenesis, and Cancer Predisposition.", Mol Syndromol, vol. 8, issue 1, pp. 4-23, 2017 Jan. PMCID: PMC5260600  PMID: 28232778
Sells, E., R. Pandey, H. Chen, B. A. Skovan, H. Cui, and N. A. Ignatenko, "Specific microRNA-mRNA Regulatory Network of Colon Cancer Invasion Mediated by Tissue Kallikrein-Related Peptidase 6.", Neoplasia, vol. 19, issue 5, pp. 396-411, 2017 May. PMCID: PMC5397577  PMID: 28431272
Michel-Ramirez, G., R. Recio-Vega, G. Ocampo-Gomez, E. Palacios-Sanchez, M. Delgado-Macias, M. Delgado-Gaona, R. Clark Lantz, J. Gandolfi, and T. Gonzalez-Cortes, "Association between YAP expression in neoplastic and non-neoplastic breast tissue with arsenic urinary levels.", J Appl Toxicol, vol. 37, issue 10, pp. 1195-1202, 2017 Oct. PMCID: PMC5790116  PMID: 28524356
Ferng, A., A. Connell, M. Nunez, K. Johnson, B. Braunhut, S. Lick, A. Desai, T. Kazui, R. Runyan, and Z. Khalpey, "Cardiac Regeneration in the Human Left Ventricle After CorMatrix Implantation.", Ann Thorac Surg, vol. 104, issue 3, pp. e239-e241, 2017 Sep. PMID: 28838516
Coate, K. C., G. Hernandez, C. A. Thorne, S. Sun, T. D. V. Le, K. Vale, S. A. Kliewer, and D. J. Mangelsdorf, "FGF21 Is an Exocrine Pancreas Secretagogue.", Cell Metab, vol. 25, issue 2, pp. 472-480, 2017 Feb 07. PMCID: PMC5299054  PMID: 28089565
Bertaux-Skeirik, N., M. Wunderlich, E. Teal, J. Chakrabarti, J. Biesiada, M. Mahe, N. Sundaram, J. Gabre, J. Hawkins, G. Jian, et al., "CD44 variant isoform 9 emerges in response to injury and contributes to the regeneration of the gastric epithelium.", J Pathol, vol. 242, issue 4, pp. 463-475, 2017 08. PMCID: PMC5591948  PMID: 28497484
Gonzalez-Cortes, T., R. Recio-Vega, R. Clark Lantz, and B. T. Chau, "DNA methylation of extracellular matrix remodeling genes in children exposed to arsenic.", Toxicol Appl Pharmacol, vol. 329, pp. 140-147, 2017 08 15. PMCID: PMC5806512  PMID: 28579250
Frank, S. B., P. L. Berger, M. Ljungman, and C. K. Miranti, "Human prostate luminal cell differentiation requires NOTCH3 induction by p38-MAPK and MYC.", J Cell Sci, vol. 130, issue 11, pp. 1952-1964, 2017 Jun 01. PMID: 28446540
Schipper, D. A., A. V. Louis, D. S. Dicken, K. Johnson, R. T. Smolenski, S. M. Black, R. Runyan, J. Konhilas, J. G. N. Garcia, and Z. Khalpey, "Improved metabolism and redox state with a novel preservation solution: implications for donor lungs after cardiac death (DCD).", Pulm Circ, vol. 7, issue 2, pp. 494-504, 2017 Apr-Jun. PMCID: PMC5467941  PMID: 28597777
Li, B., D. Orton, L. R. Neitzel, L. Astudillo, C. Shen, J. Long, X. Chen, K. C. Kirkbride, T. Doundoulakis, M. L. Guerra, et al., "Differential abundance of CK1α provides selectivity for pharmacological CK1α activators to target WNT-dependent tumors.", Sci Signal, vol. 10, issue 485, 2017 Jun 27. PMID: 28655862
Henderson, C. A., C. G. Gomez, S. M. Novak, L. Mi-Mi, and C. C. Gregorio, "Overview of the Muscle Cytoskeleton.", Compr Physiol, vol. 7, issue 3, pp. 891-944, 2017 06 18. PMCID: PMC5890934  PMID: 28640448
Carr, T. F., P. I. Beamer, J. Rothers, D. A. Stern, L. B. Gerald, C. B. Rosales, Y. Ornelas Van Horne, O. N. Pivniouk, D. Vercelli, M. Halonen, et al., "Prevalence of Asthma in School Children on the Arizona-Sonora Border.", J Allergy Clin Immunol Pract, vol. 5, issue 1, pp. 114-120, 2017. PMID: 27544711
Braune, J., U. Weyer, M. Matz-Soja, C. Hobusch, M. Kern, A. Kunath, N. Klöting, S. Kralisch, M. Blüher, R. Gebhardt, et al., "Hedgehog signalling in myeloid cells impacts on body weight, adipose tissue inflammation and glucose metabolism.", Diabetologia, vol. 60, issue 5, pp. 889-899, 2017 05. PMID: 28233033
Frank, S. B., V. V. Schulz, and C. K. Miranti, "A streamlined method for the design and cloning of shRNAs into an optimized Dox-inducible lentiviral vector.", BMC Biotechnol, vol. 17, issue 1, pp. 24, 2017 02 28. PMCID: PMC5331646  PMID: 28245848
DeVries, A., G. Wlasiuk, S. J. Miller, A. Bosco, D. A. Stern, C. I Lohman, J. Rothers, A. C. Jones, J. Nicodemus-Johnson, M. M. Vasquez, et al., "Epigenome-wide analysis links SMAD3 methylation at birth to asthma in children of asthmatic mothers.", J Allergy Clin Immunol, vol. 140, issue 2, pp. 534-542, 2017 Aug. PMCID: PMC5479765  PMID: 28011059
Smeester, L., P. A. Bommarito, E. M. Martin, R. Recio-Vega, T. Gonzalez-Cortes, E. Olivas-Calderon, C. R Lantz, and R. C. Fry, "Chronic early childhood exposure to arsenic is associated with a TNF-mediated proteomic signaling response.", Environ Toxicol Pharmacol, vol. 52, pp. 183-187, 2017 Jun. PMCID: PMC5796657  PMID: 28433805
Casillas, A. L., R. K. Toth, A. G. Sainz, N. Singh, A. A. Desai, A. S. Kraft, and N. A. Warfel, "Hypoxia-Inducible PIM Kinase Expression Promotes Resistance to Antiangiogenic Agents.", Clin Cancer Res, 2017 Oct 30. PMID: 29084916
Peela, N., E. S. Barrientos, D. Truong, G. Mouneimne, and M. Nikkhah, "Effect of suberoylanilide hydroxamic acid (SAHA) on breast cancer cells within a tumor-stroma microfluidic model.", Integr Biol (Camb), vol. 9, issue 12, pp. 988-999, 2017 Dec 11. PMID: 29188843

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