Publications

2018

Cusanovich, D. A., A. J. Hill, D. Aghamirzaie, R. M. Daza, H. A. Pliner, J. B. Berletch, G. N. Filippova, X. Huang, L. Christiansen, W. S. DeWitt, et al., "A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility.", Cell, 2018 Jul 18. PMID: 30078704
Yellowhair, M., M. R. Romanotto, D. M. Stearns, and C. R Lantz, "Uranyl acetate induced DNA single strand breaks and AP sites in Chinese hamster ovary cells.", Toxicol Appl Pharmacol, vol. 349, pp. 29-38, 2018 06 15. PMCID: PMC5972677  PMID: 29698738
Pliner, H. A., J. S. Packer, J. L. McFaline-Figueroa, D. A. Cusanovich, R. M. Daza, D. Aghamirzaie, S. Srivatsan, X. Qiu, D. Jackson, A. Minkina, et al., "Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data.", Mol Cell, 2018 Jul 23. PMID: 30078726
Thomas, A. N., R. A. Root, C. R Lantz, E. A Sáez, and J. Chorover, "Oxidative weathering decreases bioaccessibility of toxic metal(loid)s in PM emissions from sulfide mine tailings.", Geohealth, vol. 2, issue 4, pp. 118-138, 2018 Apr. PMCID: PMC6191178  PMID: 30338309
Avery, R. J., S. K. Yu, G. Cherukuri, R. B. Runyan, J. Konhilas, and Z. I. Khalpey, "Remodeling Failing Human Myocardium With Hybrid Cell/Matrix and Transmyocardial Revascularization.", ASAIO J, vol. 64, issue 5, pp. e130-e133, 2018 Sep/Oct. PMID: 29189425
Bhagwandin, C., E. L. Ashbeck, M. Whalen, J. Bandola-Simon, P. A. Roche, A. Szajman, S. Mai Truong, B. C. Wertheim, Y. C. Klimentidis, S. Ishido, et al., "The E3 ubiquitin ligase MARCH1 regulates glucose-tolerance and lipid storage in a sex-specific manner.", PLoS One, vol. 13, issue 10, pp. e0204898, 2018. PMCID: PMC6200199  PMID: 30356278
Dy, A. Blythe C., S. Tanyaratsrisakul, D. R. Voelker, and J. G. Ledford, "The Emerging Roles of Surfactant Protein-A in Asthma.", J Clin Cell Immunol, vol. 9, issue 4, 2018. PMCID: PMC6092951  PMID: 30123671
Bergsma, A., S. S. Ganguly, D. Dick, B. O. Williams, and C. K. Miranti, "Global deletion of tetraspanin CD82 attenuates bone growth and enhances bone marrow adipogenesis.", Bone, vol. 113, pp. 105-113, 2018 08. PMID: 29782939
Harris, A. P., K. A. Ismail, M. Nunez, I. Martopullo, A. Lencinas, O. I. Selmin, and R. B. Runyan, "Trichloroethylene perturbs HNF4a expression and activity in the developing chick heart.", Toxicol Lett, vol. 285, pp. 113-120, 2018 Mar 15. PMCID: PMC5803365  PMID: 29306027
Chakrabarti, J., L. Holokai, LJ. Syu, N. G. Steele, J. Chang, J. Wang, S. Ahmed, A. Dlugosz, and Y. Zavros, "Hedgehog signaling induces PD-L1 expression and tumor cell proliferation in gastric cancer.", Oncotarget, vol. 9, issue 100, pp. 37439-37457, 2018 Dec 21. PMCID: PMC6324774  PMID: 30647844
Krause, M. D., R-T. Huang, D. Wu, T-P. Shentu, D. L. Harrison, M. B. Whalen, L. K. Stolze, A. Di Rienzo, I. P. Moskowitz, M. Civelek, et al., "Genetic variant at coronary artery disease and ischemic stroke locus 1p32.2 regulates endothelial responses to hemodynamics.", Proc Natl Acad Sci U S A, vol. 115, issue 48, pp. E11349-E11358, 2018 11 27. PMCID: PMC6275533  PMID: 30429326
Dijkstra, S., G. Kok, J. G. Ledford, E. Sandalova, and R. Stevelink, "Possibilities and Pitfalls of Social Media for Translational Medicine.", Front Med (Lausanne), vol. 5, pp. 345, 2018. PMCID: PMC6291449  PMID: 30574495
Tavares, A. L. P., J. A. Brown, E. C. Ulrich, K. Dvorak, and R. B. Runyan, "Runx2-I is an Early Regulator of Epithelial-Mesenchymal Cell Transition in the Chick Embryo.", Dev Dyn, vol. 247, issue 3, pp. 542-554, 2018 Mar. PMCID: PMC5736463  PMID: 28631378
Hitzel, J., E. Lee, Y. Zhang, S. Iris Bibli, X. Li, S. Zukunft, B. Pflüger, J. Hu, C. Schürmann, A. Estefania Vasconez, et al., "Oxidized phospholipids regulate amino acid metabolism through MTHFD2 to facilitate nucleotide release in endothelial cells.", Nat Commun, vol. 9, issue 1, pp. 2292, 2018 06 12. PMCID: PMC5997752  PMID: 29895827
Kohler, L. N., J. Foote, C. P. Kelley, A. Florea, C. Shelly, H-H. Sherry Chow, P. Hsu, K. Batai, N. Ellis, K. Saboda, et al., "Selenium and Type 2 Diabetes: Systematic Review.", Nutrients, vol. 10, issue 12, 2018 Dec 05. PMID: 30563119
Lugogo, N., D. Francisco, K. J. Addison, A. Manne, W. Pederson, J. L. Ingram, C. L. Green, B. T. Suratt, J. J. Lee, M. E. Sunday, et al., "Obese asthmatic patients have decreased surfactant protein A levels: Mechanisms and implications.", J Allergy Clin Immunol, vol. 141, issue 3, pp. 918-926.e3, 2018 03. PMCID: PMC5732097  PMID: 28624607
Runyan, R. B., and P. Savagner, "Epithelial-mesenchymal transition and plasticity in the developmental basis of cancer and fibrosis.", Dev Dyn, vol. 247, issue 3, pp. 330-331, 2018 Mar. PMID: 29446197
Link, V. M., C. E. Romanoski, D. Metzler, and C. K. Glass, "MMARGE: Motif Mutation Analysis for Regulatory Genomic Elements.", Nucleic Acids Res, vol. 46, issue 14, pp. 7006-7021, 2018 08 21. PMCID: PMC6101580  PMID: 29893919
Augustus, G. Julian, D. J. Roe, E. T. Jacobs, P. Lance, and N. A. Ellis, "Is increased colorectal screening effective in preventing distant disease?", PLoS One, vol. 13, issue 7, pp. e0200462, 2018. PMCID: PMC6042755  PMID: 30001362
Pappas, C. T., G. P. Farman, R. M. Mayfield, J. P. Konhilas, and C. C. Gregorio, "Cardiac-specific knockout of Lmod2 results in a severe reduction in myofilament force production and rapid cardiac failure.", J Mol Cell Cardiol, vol. 122, pp. 88-97, 2018 09. PMCID: PMC6324932  PMID: 30102883
Chakrabarti, J., L. Holokai, LJ. Syu, N. Steele, J. Chang, A. Dlugosz, and Y. Zavros, "Mouse-Derived Gastric Organoid and Immune Cell Co-culture for the Study of the Tumor Microenvironment.", Methods Mol Biol, vol. 1817, pp. 157-168, 2018. PMID: 29959712
Link, V. M., S. H. Duttke, H. B. Chun, I. R. Holtman, E. Westin, M. A. Hoeksema, Y. Abe, D. Skola, C. E. Romanoski, J. Tao, et al., "Analysis of Genetically Diverse Macrophages Reveals Local and Domain-wide Mechanisms that Control Transcription Factor Binding and Function.", Cell, vol. 173, issue 7, pp. 1796-1809.e17, 2018 06 14. PMCID: PMC6003872  PMID: 29779944
Batai, K., A. Bergersen, E. Price, K. Hynes, N. A. Ellis, and B. R. Lee, "Clinical and Molecular Characteristics and Burden of Kidney Cancer Among Hispanics and Native Americans: Steps Toward Precision Medicine.", Clin Genitourin Cancer, vol. 16, issue 3, pp. e535-e541, 2018 06. PMID: 29449090
Chu, M., S. Mares Novak, C. Cover, A. A. Wang, I. Royal Chinyere, E. B. Juneman, D. C. Zarnescu, P. Kin Wong, and C. C. Gregorio, "Increased Cardiac Arrhythmogenesis Associated With Gap Junction Remodeling With Upregulation of RNA-Binding Protein FXR1.", Circulation, vol. 137, issue 6, pp. 605-618, 2018 02 06. PMCID: PMC5809294  PMID: 29101288
Song, J. H., N. Singh, L. A. Luevano, S. K. R. Padi, K. Okumura, V. Olive, S. M. Black, N. A. Warfel, D. W. Goodrich, and A. S. Kraft, "Mechanisms Behind Resistance to PI3K Inhibitor Treatment Induced by the PIM Kinase.", Mol Cancer Ther, vol. 17, issue 12, pp. 2710-2721, 2018 12. PMCID: PMC6279580  PMID: 30190422

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