Publications

2020

Larson, K., R. Kannaiyan, R. Pandey, Y. Chen, H. M. Babiker, and D. Mahadevan, "A Comparative Analysis of Tumors and Plasma Circulating Tumor DNA in 145 Advanced Cancer Patients Annotated by 3 Core Cellular Processes.", Cancers (Basel), vol. 12, issue 3, 2020 03 16. PMCID: PMC7140098  PMID: 32188081
Augustus, G. J., R. M. Xicola, X. Llor, and N. A. Ellis, "Decreased copy-neutral loss of heterozygosity in African American colorectal cancers.", Genes Chromosomes Cancer, vol. 59, issue 8, pp. 454-464, 2020 08. PMCID: PMC8045478  PMID: 32293075
Romanoski, C. E., X. Qi, S. Sangam, R. R. Vanderpool, R. S. Stearman, A. Conklin, M. Gonzalez-Garay, F. Rischard, R. J. Ayon, J. Wang, et al., "Transcriptomic profiles in pulmonary arterial hypertension associate with disease severity and identify novel candidate genes.", Pulm Circ, vol. 10, issue 4, pp. 2045894020968531, 2020 Oct-Dec. PMCID: PMC7727059  PMID: 33343881
Singh, N., S. K. R. Padi, J. J. Bearss, R. Pandey, K. Okumura, H. Beltran, J. H. Song, A. S. Kraft, and V. Olive, "PIM protein kinases regulate the level of the long noncoding RNA H19 to control stem cell gene transcription and modulate tumor growth.", Mol Oncol, 2020 03 07. PMID: 32146726
Mi-Mi, L., G. P. Farman, R. M. Mayfield, J. Strom, M. Chu, C. T. Pappas, and C. C. Gregorio, "In vivo elongation of thin filaments results in heart failure.", PLoS One, vol. 15, issue 1, pp. e0226138, 2020. PMCID: PMC6941805  PMID: 31899774
Sajti, E., V. M. Link, Z. Ouyang, N. J. Spann, E. Westin, C. E. Romanoski, G. J. Fonseca, L. S. Prince, and C. K. Glass, "Transcriptomic and epigenetic mechanisms underlying myeloid diversity in the lung.", Nat Immunol, vol. 21, issue 2, pp. 221-231, 2020 02. PMCID: PMC7667722  PMID: 31959980
Mahadevan, D., and G. C. Rogers, "Janus Face of Drug-Induced Tetraploidy in Non-Hodgkin Lymphoma.", Trends Cancer, 2020 04 01. PMID: 32291237
Tolkatchev, D., G. E. Smith, L. E. Schultz, M. Colpan, G. L. Helms, J. R. Cort, C. C. Gregorio, and A. S. Kostyukova, "Leiomodin creates a leaky cap at the pointed end of actin-thin filaments.", PLoS Biol, vol. 18, issue 9, pp. e3000848, 2020 09. PMCID: PMC7500696  PMID: 32898131
Lindqvist, J., W. Ma, F. Li, Y. Hernandez, J. Kolb, B. Kiss, P. Tonino, R. van der Pijl, E. Karimi, H. Gong, et al., "Triggering typical nemaline myopathy with compound heterozygous nebulin mutations reveals myofilament structural changes as pathomechanism.", Nat Commun, vol. 11, issue 1, pp. 2699, 2020 Jun 01. PMID: 32483185
Kelly, G. T., R. Faraj, Z. Dai, A. E. Cress, and T. Wang, "A mutation found in esophageal cancer alters integrin β4 mRNA splicing.", Biochem Biophys Res Commun, vol. 529, issue 3, pp. 726-732, 2020 08 27. PMID: 32736699
Stolze, L. K., A. C. Conklin, M. B. Whalen, M. López Rodríguez, K. Õunap, I. Selvarajan, A. Toropainen, T. Örd, J. Li, A. Eshghi, et al., "Systems Genetics in Human Endothelial Cells Identifies Non-coding Variants Modifying Enhancers, Expression, and Complex Disease Traits.", Am J Hum Genet, 2020 May 16. PMID: 32442411

2019

Ly, T., C. T. Pappas, D. Johnson, W. Schlecht, M. Colpan, V. E. Galkin, C. C. Gregorio, W-J. Dong, and A. S. Kostyukova, "Effects of cardiomyopathy-linked mutations K15N and R21H in tropomyosin on thin-filament regulation and pointed-end dynamics.", Mol Biol Cell, vol. 30, issue 2, pp. 268-281, 2019 01 15. PMCID: PMC6589558  PMID: 30462572
Bughio, F., and K. A. Maggert, "The peculiar genetics of the ribosomal DNA blurs the boundaries of transgenerational epigenetic inheritance.", Chromosome Res, vol. 27, issue 1-2, pp. 19-30, 2019 03 01. PMCID: PMC6393165  PMID: 30511202
Wroblewski, L. E., E. Choi, C. Petersen, A. G. Delgado, B. M Piazuelo, J. Romero-Gallo, T. L. Lantz, Y. Zavros, R. J. Coffey, J. R. Goldenring, et al., "Targeted mobilization of Lrig1 gastric epithelial stem cell populations by a carcinogenic type IV secretion system.", Proc Natl Acad Sci U S A, vol. 116, issue 39, pp. 19652-19658, 2019 09 24. PMCID: PMC6765285  PMID: 31488717
Chen, H., E. Sells, R. Pandey, E. R. Abril, C-H. Hsu, R. S. Krouse, R. B. Nagle, G. Pampalakis, G. Sotiropoulou, and N. A. Ignatenko, "Kallikrein 6 protease advances colon tumorigenesis induction of the high mobility group A2 protein.", Oncotarget, vol. 10, issue 58, pp. 6062-6078, 2019 10 22. PMCID: PMC6817440  PMID: 31692974
Cabel, C. R., E. Alizadeh, D. J. Robbins, Y. Ahmed, E. Lee, and C. A. Thorne, "Single-Cell Analyses Confirm the Critical Role of LRP6 for Wnt Signaling in APC-Deficient Cells.", Dev Cell, vol. 49, issue 6, pp. 827-828, 2019 06 17. PMCID: PMC6613640  PMID: 31211991
Capurro, M. I., L. K. Greenfield, A. Prashar, S. Xia, M. Abdullah, H. Wong, X. Zoe Zhong, N. Bertaux-Skeirik, J. Chakrabarti, I. Siddiqui, et al., "VacA generates a protective intracellular reservoir for Helicobacter pylori that is eliminated by activation of the lysosomal calcium channel TRPML1.", Nat Microbiol, vol. 4, issue 8, pp. 1411-1423, 2019 08 01. PMID: 31110360
Pandey, R., M. Zhou, S. Islam, B. Chen, N. K. Barker, P. Langlais, A. Srivastava, M. Luo, L. S. Cooke, E. Weterings, et al., "Carcinoembryonic antigen cell adhesion molecule 6 (CEACAM6) in Pancreatic Ductal Adenocarcinoma (PDA): An integrative analysis of a novel therapeutic target.", Sci Rep, vol. 9, issue 1, pp. 18347, 2019 12 04. PMID: 31797958
Rubenstein, C. S., J. M. C. Gard, M. Wang, J. E. McGrath, N. Ingabire, J. P. Hinton, K. D. Marr, S. J. Simpson, R. B. Nagle, C. K. Miranti, et al., "Gene editing of α6 integrin inhibits muscle invasive networks and increases cell-cell biophysical properties in prostate cancer.", Cancer Res, 07/2019. PMID: 31337652
Wang, M., G. C. Rogers, and A. E. Cress, "Immunofluorescence-based Determination of Centrosome Number in Tissue Samples.", Bio Protoc, vol. 9, issue 20, pp. e3396, 2019 Oct 20. PMCID: PMC7854016  PMID: 33654897
Holokai, L., J. Chakrabarti, T. Broda, J. Chang, J. A. Hawkins, N. Sundaram, L. E. Wroblewski, R. M. Peek, J. Wang, M. Helmrath, et al., "Increased Programmed Death-Ligand 1 is an Early Epithelial Cell Response to Helicobacter pylori Infection.", PLoS Pathog, vol. 15, issue 1, pp. e1007468, 2019 01 01. PMCID: PMC6380601  PMID: 30703170
Wang, M., J. P. Hinton, J. M. C. Gard, J. G. N. Garcia, B. S. Knudsen, R. B. Nagle, and A. E. Cress, "Integrin α6β4E variant is associated with actin and CD9 structures and modifies the biophysical properties of cell-cell and cell-extracellular matrix interactions.", Mol Biol Cell, vol. 30, issue 7, pp. 838-850, 2019 03 21. PMCID: PMC6589785  PMID: 30865564
Runyan, R. B., O. I. Selmin, S. M. Smith, and J. L. Freeman, "Letter to the Editor.", Birth Defects Res, vol. 111, issue 16, pp. 1234-1236, 2019 10 01. PMID: 31385457
Steele, N. G., J. Chakrabarti, J. Wang, J. Biesiada, L. Holokai, J. Chang, L. M. Nowacki, J. Hawkins, M. Mahe, N. Sundaram, et al., "An Organoid-Based Preclinical Model of Human Gastric Cancer.", Cell Mol Gastroenterol Hepatol, vol. 7, issue 1, pp. 161-184, 2019 01 01. PMCID: PMC6279812  PMID: 30522949
Allan, C. M., P. J. Heizer, Y. Tu, N. P. Sandoval, R. S. Jung, J. E. Morales, E. Sajti, T. D. Troutman, T. L. Saunders, D. A. Cusanovich, et al., "An upstream enhancer regulates expression in a tissue-specific manner.", J Lipid Res, vol. 60, issue 4, pp. 869-879, 2019 04 01. PMCID: PMC6446700  PMID: 30598475

Pages