Publications
2022
Kang, HJ., S. Allison, A. Spangenberg, T. Carr, R. Sprissler, M. Halonen, and D. A. Cusanovich, "Evaluation of Swab-Seq as a scalable, sensitive assay for community surveillance of SARS-CoV-2 infection.", Sci Rep, vol. 12, issue 1, pp. 3047, 23 FEB 2022.
PMCID: PMC8866503 PMID: 35197492
Kwak, E-A., C. C. Pan, A. Ramonett, S. Kumar, P. Cruz-Flores, T. Ahmed, H. R. Ortiz, J. J. Lochhead, N. A. Ellis, G. Mouneimne, et al., "β-spectrin as a stalk cell-intrinsic regulator of VEGF signaling.", Nat Commun, vol. 13, issue 1, pp. 1326, 2022 Mar 14.
PMCID: PMC8921520 PMID: 35288568
Toth, R. K., R. Solomon, and N. A. Warfel, "Stabilization of PIM Kinases in Hypoxia Is Mediated by the Deubiquitinase USP28.", Cells, vol. 11, issue 6, 2022 Mar 16.
PMCID: PMC8947361 PMID: 35326457
de Renty, C., K. W. Pond, M. K. Yagle, and N. A. Ellis, "BLM Sumoylation Is Required for Replication Stability and Normal Fork Velocity During DNA Replication.", Front Mol Biosci, vol. 9, pp. 875102, 2022.
PMCID: PMC9284272 PMID: 35847987
Toropainen, A., L. K. Stolze, T. Örd, M. B. Whalen, P. Martí Torrell, V. M. Link, M. U. Kaikkonen, and C. E. Romanoski, "Functional noncoding SNPs in human endothelial cells fine-map vascular trait associations.", Genome Res, vol. 32, issue 3, pp. 409-424, 2022 03.
PMCID: PMC8896458 PMID: 35193936
Pond, K. W., J. M. Morris, O. Alkhimenok, R. P. Varghese, C. R. Cabel, N. A. Ellis, J. Chakrabarti, Y. Zavros, J. L. Merchant, C. A. Thorne, et al., "Live-cell imaging in human colonic monolayers reveals ERK waves limit the stem cell compartment to maintain epithelial homeostasis.", Elife, vol. 11, 12/2022.
Harryman, W. L., K. D. Marr, R. B. Nagle, and A. E. Cress, "Integrins and Epithelial-Mesenchymal Cooperation in the Tumor Microenvironment of Muscle-Invasive Lethal Cancers.", Front Cell Dev Biol, vol. 10, pp. 837585, 2022.
PMCID: PMC8921537 PMID: 35300411
2021
Selvarajan, I., A. Toropainen, K. M. Garske, M. López Rodríguez, A. Ko, Z. Miao, D. Kaminska, K. Õunap, T. Örd, A. Ravindran, et al., "Integrative analysis of liver-specific non-coding regulatory SNPs associated with the risk of coronary artery disease.", Am J Hum Genet, vol. 108, issue 3, pp. 411-430, 2021 03 04.
PMCID: PMC8008493 PMID: 33626337
Rico, K., S. Duan, R. L. Pandey, Y. Chen, J. T. Chakrabarti, J. Starr, Y. Zavros, T. Else, B. W. Katona, D. C. Metz, et al., "Genome analysis identifies differences in the transcriptional targets of duodenal versus pancreatic neuroendocrine tumours.", BMJ Open Gastroenterol, vol. 8, issue 1, 2021 Nov.
PMCID: PMC8576490 PMID: 34750164
Martinez, J. A., M. B. Skiba, H-H. Sherry Chow, W. M. Chew, K. Saboda, P. Lance, N. A. Ellis, and E. T. Jacobs, "A Protective Role for Arachidonic Acid Metabolites against Advanced Colorectal Adenoma in a Phase III Trial of Selenium.", Nutrients, vol. 13, issue 11, 2021 Oct 29.
PMCID: PMC8621008 PMID: 34836131
Hartiala, J. A., Y. Han, Q. Jia, J. R. Hilser, P. Huang, J. Gukasyan, W. S. Schwartzman, Z. Cai, S. Biswas, D-A. Trégouët, et al., "Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.", Eur Heart J, vol. 42, issue 9, pp. 919-933, 2021 Mar 01.
PMCID: PMC7936531 PMID: 33532862
Wusterbarth, E., Y. Chen, H. Jecius, E. Krall, R. B. Runyan, R. Pandey, and V. Nfonsam, "Cartilage Oligomeric Matrix Protein, COMP may be a Better Prognostic Marker Than CEACAM5 and Correlates With Colon Cancer Molecular Subtypes, Tumor Aggressiveness and Overall Survival.", J Surg Res, vol. 270, pp. 169-177, 2021 Oct 20.
PMID: 34687957
Colpan, M., J. Iwanski, and C. C. Gregorio, "CAP2 is a regulator of actin pointed end dynamics and myofibrillogenesis in cardiac muscle.", Commun Biol, vol. 4, issue 1, pp. 365, 2021 Mar 19.
PMCID: PMC7979805 PMID: 33742108
Örd, T., K. Õunap, L. Stolze, R. Aherrahrou, V. Nurminen, I. Selvarajan, A. Toropainen, T. Lönnberg, E. Aavik, S. Ylä-Herttuala, et al., "Single-Cell Epigenomics and Functional Fine-Mapping of Atherosclerosis GWAS Loci.", Circ Res, 2021 May 24.
PMID: 34024118
Pandey, R., M. Zhou, Y. Chen, D. Darmoul, C. C. Kisiel, V. N. Nfonsam, and N. A. Ignatenko, "Molecular Pathways Associated with Kallikrein 6 Overexpression in Colorectal Cancer.", Genes (Basel), vol. 12, issue 5, 2021 05 16.
PMCID: PMC8157155 PMID: 34065672
Polverino, F., T. David Wu, J. Rojas-Quintero, X. Wang, J. Mayo, M. Tomchaney, J. Tram, S. Packard, D. Zhang, K. H. Cleveland, et al., "Metformin: Experimental and Clinical Evidence for a Potential Role in Emphysema Treatment.", Am J Respir Crit Care Med, 2021 May 25.
PMID: 34033525
Cheng, J. N., J. B. Frye, S. A. Whitman, A. G. Kunihiro, R. Pandey, and J. L. Funk, "A Role for TGFβ Signaling in Preclinical Osteolytic Estrogen Receptor-Positive Breast Cancer Bone Metastases Progression.", Int J Mol Sci, vol. 22, issue 9, 2021 Apr 24.
PMCID: PMC8123146 PMID: 33923316
Casillas, A. L., S. S. Chauhan, R. K. Toth, A. G. Sainz, A. N. Clements, C. C. Jensen, P. R. Langlais, C. K. Miranti, A. E. Cress, and N. A. Warfel, "Direct phosphorylation and stabilization of HIF-1α by PIM1 kinase drives angiogenesis in solid tumors.", Oncogene, 2021 Jul 02.
PMID: 34211090
Singh, N., V. R. Ramnarine, J. H. Song, R. Pandey, S. K. R. Padi, M. Nouri, V. Olive, M. Kobelev, K. Okumura, D. McCarthy, et al., "The long noncoding RNA H19 regulates tumor plasticity in neuroendocrine prostate cancer.", Nat Commun, vol. 12, issue 1, pp. 7349, 2021 Dec 21.
PMID: 34934057
Conklin, A. C., H. Nishi, F. Schlamp, T. Örd, K. Õunap, M. U. Kaikkonen, E. A. Fisher, and C. E. Romanoski, "Meta-Analysis of Smooth Muscle Lineage Transcriptomes in Atherosclerosis and Their Relationships to In Vitro Models.", Immunometabolism, vol. 3, issue 3, 2021.
PMCID: PMC8232871 PMID: 34178388
Pivniouk, V., O. Pivniouk, A. DeVries, J. L. Uhrlaub, A. Michael, D. Pivniouk, S. R. VanLinden, M. Y. Conway, S. Hahn, S. P. Malone, et al., "The OM-85 bacterial lysate inhibits SARS-CoV-2 infection of epithelial cells by downregulating SARS-CoV-2 receptor expression.", J Allergy Clin Immunol, 2021 Dec 10.
PMCID: PMC8660661 PMID: 34902435
Batai, K., M. J. Trejo, Y. Chen, L. N. Kohler, P. Lance, N. A. Ellis, M. C. Cornelis, H-H. Sherry Chow, C-H. Hsu, and E. T. Jacobs, "Genome-Wide Association Study of Response to Selenium Supplementation and Circulating Selenium Concentrations in Adults of European Descent.", J Nutr, vol. 151, issue 2, pp. 293-302, 2021 02 01.
PMCID: PMC7849979 PMID: 33382417
Eedara, B. Babu, W. Alabsi, D. Encinas-Basurto, R. Polt, J. G. Ledford, and H. M. Mansour, "Inhalation Delivery for the Treatment and Prevention of COVID-19 Infection.", Pharmaceutics, vol. 13, issue 7, 2021 Jul 14.
PMCID: PMC8308954 PMID: 34371768
Grant, A., R. M. Xicola, V. Nguyen, J. Lim, C. Thorne, B. Salhia, X. Llor, N. Ellis, and M. Padi, "Molecular drivers of tumor progression in microsatellite stable APC mutation-negative colorectal cancers.", Sci Rep, vol. 11, issue 1, pp. 23507, 2021 12 06.
PMCID: PMC8648784 PMID: 34873211
Chan, B. Y. H., A. Roczkowsky, W. Jung Cho, M. Poirier, C. Sergi, V. Keschrumrus, J. M. Churko, H. Granzier, and R. Schulz, "MMP inhibitors attenuate doxorubicin cardiotoxicity by preventing intracellular and extracellular matrix remodelling.", Cardiovasc Res, vol. 117, issue 1, pp. 188-200, 2021 Jan 01.
PMCID: PMC7797218 PMID: 31995179